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Research papers in which DynaFit was used for the analysis of experimental data.

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Download journal article describing DynaFit (1996)
P. Kuzmic (1996) Anal. Biochem. 237, 260-273.

Download a DynaFit review from Methods (2009)
P. Kuzmic (2009) Methods Enzymol. 467, 247-280.


Chronological List of ArticlesTop of pageNext section

The following 829 journal articles contain a bibliographic reference to the program DYNAFIT as of April 7, 2014. The most recently published work is at the top of the list.

  1. "Role of kappa ->lambda light-chain constant-domain switch in the structure and functionality of A17 reactibody"
    Ponomarenko, N; Chatziefthimiou, SD; Kurkova, I; Mokrushina, Y; Stepanova, A; Smirnov, I; Avakyan, M; Bobik, T; Mamedov, A; Mitkevich, V; Belogurov, A; Fedorova, OS; Dubina, M; Golovin, A; Lamzin, V; Friboulet, A; Makarov, AA; Wilmanns, M; Gabibov, A (2014)
    Acta Crystallogr. Sect. D-Biol. Crystallogr. 70(Pt. 3), 708 -- 719.

  2. "Induced-fit catalysis of corannulene bowl-to-bowl inversion"
    Juricek, M; Strutt, NL; Barnes, JC; Butterfield, AM; Dale, EJ; Baldridge, KK; Stoddart, F; Siegel, JS (2014)
    Nat. Chem. 6(3), 222 -- 228.

  3. "From Disilene (Si=Si) to Phosphasilene (Si=P) and Phosphacumulene (P=C=N)"
    Willmes, P; Cowley, MJ; Hartmann, M; Zimmer, M; Huch, V; Scheschkewitz, D (2014)
    Angew. Chem.-Int. Edit. 53(8), 2216 -- 2220.

  4. "Pseudilins: Halogenated, Allosteric Inhibitors of the Non-Mevalonate Pathway Enzyme IspD"
    Kunfermann, A; Witschel, M; Illarionov, B; Martin, R; Rottmann, M; Hoffken, HW; Seet, M; Eisenreich, W; Knolker, HJ; Fischer, M; Bacher, A; Groll, M; Diederich, F (2014)
    Angew. Chem.-Int. Edit. 53(8), 2235 -- 2239.

  5. "Distinct Conformational Transition Patterns of Noncoding 7SK snRNA and HIV TAR RNAs upon Tat Binding"
    Lu, J; Wong, V; Zhang, Y; Tran, T; Zhao, L; Xia, A; Xia, TB; Qi, X (2014)
    Biochemistry 53(4), 675 -- 681.

  6. "Competitive and Cooperative Interactions Mediate RNA Transfer from Herpesvirus Saimiri ORF57 to the Mammalian Export Adaptor ALYREF"
    Tunnicliffe, RB; Hautbergue, GM; Wilson, SA; Kalra, P; Golovanov, AP (2014)
    PLoS Pathog. 10(2), e1003907.

  7. "Elements in nucleotide sensing and hydrolysis of the AAA plus disaggregation machine ClpB: a structure-based mechanistic dissection of a molecular motor"
    Zeymer, C; Barends, TRM; Werbeck, ND; Schlichting, I; Reinstein, J (2014)
    Acta Crystallogr. Sect. D-Biol. Crystallogr. 70(Pt. 2), 582 -- 595.

  8. "CYP2E1 hydroxylation of aniline involves negative cooperativity"
    Hartman, JH; Knott, K; Miller, GP (2014)
    Biochem. Pharmacol. 87(3), 523 -- 533.

  9. "Covalent EGFR inhibitor analysis reveals importance of reversible interactions to potency and mechanisms of drug resistance"
    Schwartz, PA; Kuzmic, P; Solowiej, J; Bergqvist, S; Bolanos, B; Almaden, C; Nagata, A; Ryan, K; Feng, JL; Dalvie, D; Kath, JC; Xu, MR; Wani, R; Murray, BW (2014)
    Proc. Natl. Acad. Sci. U. S. A. 111(1), 173 -- 178.

  10. "Step-by-step mechanism of DNA damage recognition by human 8-oxoguanine DNA glycosylase"
    Kuznetsova, AA; Kuznetsov, NA; Ishchenko, AA; Saparbaev, MK; Fedorova, OS (2014)
    Biochim. Biophys. Acta-Gen. Subj. 1840(1), 387 -- 395.

  11. "Mutation of Nonessential Cysteines Shows That the NF-kappa B Essential Modulator Forms a Constitutive Noncovalent Dinner That Binds I kappa B Kinase-beta with High Affinity"
    Cote, SM; Gilmore, TD; Shaffer, R; Weber, U; Bollam, R; Golden, MS; Glover, K; Herscovitch, M; Ennis, T; Allen, KN; Whitty, A (2013)
    Biochemistry 52(51), 9141 -- 9154.

  12. "Homotropic Cooperativity from the Activation Pathway of the Allosteric Ligand-Responsive Regulatory trp RNA-Binding Attenuation Protein"
    Kleckner, IR; McElroy, CA; Kuzmic, P; Gollnick, P; Foster, MP (2013)
    Biochemistry 52(49), 8855 -- 8865.

  13. "Role of the Metal, Ligand, and Alkyl/Aryl Group in the Hydrolysis Reactions of Group 10 Organometallic Cations [(L)M(R)](+)"
    Woolley, MJ; Khairallah, GN; da Silva, G; Donnelly, PS; Yates, BF; O'Hair, RAJ (2013)
    Organometallics 32(23), 6931 -- 6944.

  14. "Using Remote Substituents to Control Solution Structure and Anion Binding in Lanthanide Complexes"
    Tropiano, M; Blackburn, OA; Tilney, JA; Hill, LR; Placidi, MP; Aarons, RJ; Sykes, D; Jones, MW; Kenwright, AM; Snaith, JS; Sorensen, TJ; Faulkner, S (2013)
    Chem.-Eur. J. 19(49), 16566 -- 16571.

  15. "Nonlinear Regression Models for Determination of Nicotinamide Adenine Dinucleotide Content in Human Embryonic Stem Cells"
    Salykin, A; Kuzmic, P; Kyrylenko, O; Musilova, J; Glatz, Z; Dvorak, P; Kyrylenko, S (2013)
    Stem Cell Rev. Rep. 9(6), 786 -- 793.

  16. "Differences in butadiene adduct formation between rats and mice not due to selective inhibition of CYP2E1 by butadiene metabolites"
    Pianalto, KM; Hartman, JH; Boysen, G; Miller, GP (2013)
    Toxicol. Lett. 223(2), 221 -- 227.

  17. "Anion Sensing by Solution- and Surface-Assembled Osmium(II) Bipyridyl Rotaxanes"
    Lehr, J; Lang, T; Blackburn, OA; Barendt, TA; Faulkner, S; Davis, JJ; Beer, PD (2013)
    Chem.-Eur. J. 19(47), 15898 -- 15906.

  18. "Discovery of NMS-E973 as novel, selective and potent inhibitor of heat shock protein 90 (Hsp90)"
    Brasca, MG; Mantegani, S; Amboldi, N; Bindi, S; Caronni, D; Casale, E; Ceccarelli, W; Colombo, N; De Ponti, A; Donati, D; Ermoli, A; Fachin, G; Felder, ER; Ferguson, RD; Fiorelli, C; Guanci, M; Isacchi, A; Pesenti, E; Polucci, P; Riceputi, L; Sola, F; Visco, C; Zuccotto, F; Fogliatto, G (2013)
    Bioorg. Med. Chem. 21(22), 7047 -- 7063.

  19. "Kinetics of Presynaptic Filament Assembly in the Presence of Single-Stranded DNA Binding Protein and Recombination Mediator Protein"
    Liu, J; Berger, CL; Morrical, SW (2013)
    Biochemistry 52(45), 7878 -- 7889.

  20. "The mechanism of ubihydroquinone oxidation at the Q(o)-site of the cytochrome bc(1) complex"
    Crofts, AR; Hong, SJ; Wilson, C; Burton, R; Victoria, D; Harrison, C; Schulten, K (2013)
    Biochim. Biophys. Acta-Bioenerg. 1827(11-12), 1362 -- 1377.

  21. "Splicing Kinase SRPK1 Conforms to the Landscape of Its SR Protein Substrate"
    Aubol, BE; Jamros, MA; McGlone, ML; Adams, JA (2013)
    Biochemistry 52(43), 7595 -- 7605.

  22. "Physical Characterization of the Manganese-Sensing Pneumococcal Surface Antigen Repressor from Streptococcus pneumoniae"
    Lisher, JP; Higgins, KA; Maroney, MJ; Giedroc, DP (2013)
    Biochemistry 52(43), 7689 -- 7701.

  23. "Restoring the Procofactor State of Factor Va-like Variants by Complementation with B-domain Peptides"
    Bunce, MW; Bos, MHA; Krishnaswamy, S; Camire, RM (2013)
    J. Biol. Chem. 288(42), 30151 -- 30160.

  24. "Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics"
    Marchand, A; Ferreira, R; Tateishi-Karimata, H; Miyoshi, D; Sugimoto, N; Gabelica, V (2013)
    J. Phys. Chem. B 117(41), 12391 -- 12401.

  25. "Kinetics of Action of a Two-Stage Pro-Inhibitor of Serine beta-Lactamases"
    Tilvawala, R; Pratt, RF (2013)
    Biochemistry 52(40), 7060 -- 7070.

  26. "DNA Damage Processing by Human 8-Oxoguanine-DNA Glycosylase Mutants with the Occluded Active Site"
    Lukina, MV; Popov, AV; Koval, VV; Vorobjev, YN; Fedorova, OS; Zharkov, DO (2013)
    J. Biol. Chem. 288(40), 28936 -- 28947.

  27. "V-Type Allosteric Inhibition Is Described by a Shift in the Rate-Determining Step for alpha-Isopropylmalate Synthase from Mycobacterium tuberculosis"
    Casey, AK; Schwalm, EL; Hays, BN; Frantom, PA (2013)
    Biochemistry 52(39), 6737 -- 6739.

  28. "Intrinsic Flexibility of West Nile Virus Protease in Solution Characterized Using Small-Angle X-ray Scattering"
    Garces, AP; Watowich, SJ (2013)
    Biochemistry 52(39), 6856 -- 6865.

  29. "Modulatory ATP binding to the E2 state of maize plasma membrane H+-ATPase indicated by the kinetics of vanadate inhibition"
    Wang, XZ; Qian, XQ; Stumpf, B; Fatima, A; Feng, K; Schubert, S; Hanstein, S (2013)
    FEBS J. 280(19), 4793 -- 4806.

  30. "Improvement of the efficiency of transglycosylation catalyzed by alpha-galactosidase from Thermotoga maritima by protein engineering"
    Bobrov, KS; Borisova, AS; Eneyskaya, EV; Ivanen, DR; Shabalin, KA; Kulminskaya, AA; Rychkov, GN (2013)
    Biochem.-Moscow 78(10), 1112 -- 1123.

  31. "Membrane Binding by Prothrombin Mediates Its Constrained Presentation to Prothrombinase for Cleavage"
    Bradford, HN; Orcutt, SJ; Krishnaswamy, S (2013)
    J. Biol. Chem. 288(39), 27789 -- 27800.

  32. "Metal Switch-controlled Myosin II from Dictyostelium discoideum Supports Closure of Nucleotide Pocket during ATP Binding Coupled to Detachment from Actin Filaments"
    Cochran, JC; Thompson, ME; Kull, FJ (2013)
    J. Biol. Chem. 288(39), 28312 -- 28323.

  33. "Substrate Envelope-Designed Potent HIV-1 Protease Inhibitors to Avoid Drug Resistance"
    Nalam, MNL; Ali, A; Reddy, GSKK; Cao, H; Anjum, SG; Altman, MD; Yilmaz, NK; Tidor, B; Rana, TM; Schiffer, CA (2013)
    Chem. Biol. 20(9), 1116 -- 1124.

  34. "A century of enzyme kinetic analysis, 1913 to 2013"
    Johnson, KA (2013)
    FEBS Lett. 587(17), 2753 -- 2766.

  35. "Siderocalin Outwits the Coordination Chemistry of Vibriobactin, a Siderophore of Vibrio cholerae"
    Allred, BE; Correnti, C; Clifton, MC; Strong, RK; Raymond, KN (2013)
    ACS Chem. Biol. 8(9), 1882 -- 1887.

  36. "Structure of pyrazole derivatives impact their affinity, stoichiometry, and cooperative interactions for CYP2E1 complexes"
    Hartman, JH; Bradley, AM; Laddusaw, RM; Perry, MD; Miller, GP (2013)
    Arch. Biochem. Biophys. 537(1), 12 -- 20.

  37. "Inter-residue coupling contributes to high-affinity subtype-selective binding of alpha-bungarotoxin to nicotinic receptors"
    Sine, SM; Huang, S; Li, SX; daCosta, CJB; Chen, L (2013)
    Biochem. J. 454(Pt. 2), 311 -- 321.

  38. "Cooperative effects for CYP2E1 differ between styrene and its metabolites"
    Hartman, JH; Boysen, G; Miller, GP (2013)
    Xenobiotica 43(9), 755 -- 764.

  39. "Multiple and Cooperative Binding of Fluorescence Light-up Probe Thioflavin T with Human Telomere DNA G-Quadruplex"
    Gabelica, V; Maeda, R; Fujimoto, T; Yaku, H; Murashima, T; Sugimoto, N; Miyoshi, D (2013)
    Biochemistry 52(33), 5620 -- 5628.

  40. "In Vitro and Cellular Self-Assembly of a Zn-Binding Protein Cryptand via Templated Disulfide Bonds"
    Medina-Morales, A; Perez, A; Brodin, JD; Tezcan, FA (2013)
    J. Am. Chem. Soc. 135(32), 12013 -- 12022.

  41. "Precisely Ordered Phosphorylation Reactions in the p38 Mitogen-activated Protein (MAP) Kinase Cascade"
    Humphreys, JM; Piala, AT; Akella, R; He, HX; Goldsmith, EJ (2013)
    J. Biol. Chem. 288(32), 23322 -- 23330.

  42. "A Link between Dimerization and Autophosphorylation of the Response Regulator PhoB"
    Creager-Allen, RL; Silversmith, RE; Bourret, RB (2013)
    J. Biol. Chem. 288(30), 21755.

  43. "Development of novel molecular probes of the Rio1 atypical protein kinase"
    Mielecki, M; Krawiec, K; Kiburu, I; Grzelak, K; Zagorski, W; Kierdaszuk, B; Kowa, K; Fokt, I; Szymanski, S; Swierk, P; Szeja, W; Priebe, W; Lesyng, B; LaRonde-LeBlanc, N (2013)
    BBA-Proteins Proteomics 1834(7), 1292 -- 1301.

  44. "NMS-E973, a Novel Synthetic Inhibitor of Hsp90 with Activity against Multiple Models of Drug Resistance to Targeted Agents, Including Intracranial Metastases"
    Fogliatto, G; Gianellini, L; Brasca, MG; Casale, E; Ballinari, D; Ciomei, M; Degrassi, A; De Ponti, A; Germani, M; Guanci, M; Paolucci, M; Polucci, P; Russo, M; Sola, F; Valsasina, B; Visco, C; Zuccotto, F; Donati, D; Felder, E; Pesenti, E; Galvani, A; Mantegani, S; Isacchi, A (2013)
    Clin. Cancer Res. 19(13), 3520 -- 3532.

  45. "Kinetic-mechanistic studies of lipase-polymer micelle binding and catalytic degradation: Enzyme interfacial activation"
    Zhu, XB; Fryd, M; Wayland, BB (2013)
    Polym. Degrad. Stabil. 98(6), 1173 -- 1181.

  46. "Covalent Inhibition of Serine beta-Lactamases by Novel Hydroxamic Acid Derivatives"
    Tilvawala, R; Pratt, RF (2013)
    Biochemistry 52(21), 3712 -- 3720.

  47. "Comprehensive Experimental and Computational Analysis of Binding Energy Hot Spots at the NF-kappa B Essential Modulator/IKK beta Protein-Protein Interface"
    Golden, MS; Cote, SM; Sayeg, M; Zerbe, BS; Villar, EA; Beglov, D; Sazinsky, SL; Georgiadis, RM; Vajda, S; Kozakov, D; Whitty, A (2013)
    J. Am. Chem. Soc. 135(16), 6242 -- 6256.

  48. "Mechanism of [4Fe-4S](Cys)(4) Cluster Nitrosylation Is Conserved among NO-responsive Regulators"
    Crack, JC; Stapleton, MR; Green, J; Thomson, AJ; Le Brun, NE (2013)
    J. Biol. Chem. 288(16), 11492 -- 11502.

  49. "Dual Substrate Specificity of Bacillus subtilis PBP4a"
    Nemmara, VV; Adediran, SA; Dave, K; Duez, C; Pratt, RF (2013)
    Biochemistry 52(15), 2627 -- 2637.

  50. "Allosteric Inhibition of a Zinc-Sensing Transcriptional Repressor: Insights into the Arsenic Repressor (ArsR) Family"
    Campanello, GC; Ma, Z; Grossoehme, NE; Guerra, AJ; Ward, BP; DiMarchi, RD; Ye, YZ; Dann, CE; Giedroc, DP (2013)
    J. Mol. Biol. 425(7), 1143 -- 1157.

  51. "Apparent Anti-Woodward-Hoffmann Addition to a Nickel Bis(dithiolene) Complex: The Reaction Mechanism Involves Reduced, Dimetallic Intermediates"
    Dang, L; Shibl, MF; Yang, XZ; Harrison, DJ; Alak, A; Lough, AJ; Fekl, U; Brothers, EN; Hall, MB (2013)
    Inorg. Chem. 52(7), 3711 -- 3723.

  52. "The hydrophobic substituent in aminophospholipids affects the formation kinetics of their Schiff bases"
    Caldes, C; Vilanova, B; Adrover, M; Donoso, J; Munoz, F (2013)
    Bioorg. Med. Chem. Lett. 23(7), 2202 -- 2206.

  53. "Inhibition of DD-Peptidases by a Specific Trifluoroketone. Crystal Structure of a Complex with the Actinomadura R39 DD-Peptidase"
    Dzhekieva, L; Adediran, SA; Herman, R; Kerff, F; Duez, C; Charlier, P; Sauvage, E; Pratt, RF (2013)
    Biochemistry 52(12), 2128 -- 2138.

  54. "A Folding-Based Approach for the Luminescent Detection of a Short RNA Hairpin"
    Penas, C; Pazos, E; Mascarenas, JL; Vazquez, ME (2013)
    J. Am. Chem. Soc. 135(10), 3812 -- 3814.

  55. "Solution Structure of Mouse Hepatitis Virus (MHV) nsp3a and Determinants of the Interaction with MHV Nucleocapsid (N) Protein"
    Keane, SC; Giedroc, DP (2013)
    J. Virol. 87(6), 3502 -- 3515.

  56. "Role of the -PEWY-glutamate in catalysis at the Q(o)-site of the Cyt bc(1) complex"
    Victoria, D; Burton, R; Crofts, AR (2013)
    Biochim. Biophys. Acta-Bioenerg. 1827(3), 365 -- 386.

  57. "Fluorescence lifetime analysis and effect of magnesium ions on binding of NADH to human aldehyde dehydrogenase 1"
    Gonnella, TP; Keating, JM; Kjemhus, JA; Picklo, MJ; Biggane, JP (2013)
    Chem.-Biol. Interact. 202(1-3), 85 -- 90.

  58. "Sensitizing Curium Luminescence through an Antenna Protein To Investigate Biological Actinide Transport Mechanisms"
    Sturzbecher-Hoehne, M; Goujon, C; Deblonde, GJP; Mason, AB; Abergel, RJ (2013)
    J. Am. Chem. Soc. 135(7), 2676 -- 2683.

  59. "Recognition of Operator DNA by let Repressor"
    Berens, C; Porschke, D (2013)
    J. Phys. Chem. B 117(6), 1880 -- 1885.

  60. "Effect of Flanking Bases on the DNA Specificity of EmBP-1"
    De Jong, AT (2013)
    Biochemistry 52(5), 786 -- 794.

  61. "Copper(I)-alpha-Synuclein Interaction: Structural Description of Two Independent and Competing Metal Binding Sites"
    Camponeschi, F; Valensin, D; Tessari, I; Bubacco, L; Dell'Acqua, S; Casella, L; Monzani, E; Gaggelli, E; Valensin, G (2013)
    Inorg. Chem. 52(3), 1358 -- 1367.

  62. "Imidazole- and Benzimidazole-Based Inhibitors of the Kinase IspE: Targeting the Substrate-Binding Site and the Triphosphate-Binding Loop of the ATP Site"
    Mombelli, P; Le Chapelain, C; Munzinger, N; Joliat, E; Illarionov, B; Schweizer, WB; Hirsch, AKH; Fischer, M; Bacher, A; Diederich, F (2013)
    Eur. J. Org. Chem. (6), 1068 -- 1079.

  63. "Kinetics of Ligand-Receptor Interaction Reveals an Induced-Fit Mode of Binding in a Cyclic Nucleotide-Activated Protein"
    Peuker, S; Cukkemane, A; Held, M; Noe, F; Kaupp, UB; Seifert, R (2013)
    Biophys. J. 104(1), 63 -- 74.

  64. "Kinetic Mechanism of Indole-3-glycerol Phosphate Synthase"
    Schlee, S; Dietrich, S; Kurcon, T; Delaney, P; Goodey, NM; Sterner, R (2013)
    Biochemistry 52(1), 132 -- 142.

  65. "Ternary self-assemblies in water: forming a pentanuclear ReLn(4) assembly by association of binuclear lanthanide binding pockets with fac-Re(CO)(3)(dinicotinate)(2)Cl"
    Hill, LR; Blackburn, OA; Jones, MW; Tropiano, M; Sorensen, TJ; Faulkner, S (2013)
    Dalton Trans. 42(46), 16255 -- 16258.

  66. "Receptor recognition of transferrin bound to lanthanides and actinides: a discriminating step in cellular acquisition of f-block metals"
    Deblonde, GJP; Sturzbecher-Hoehne, M; Mason, AB; Abergel, RJ (2013)
    Metallomics 5(6), 619 -- 626.

  67. "Selenite and tellurite form mixed seleno- and tellurotrisulfides with CstR from Staphylococcus aureus"
    Luebke, JL; Arnold, RJ; Giedroc, DP (2013)
    Metallomics 5(4), 335 -- 342.

  68. "Cation-pi induced aggregation of water-soluble [Pt-II(diimine)(L-n-S,O)](+) complexes studied by H-1 DOSY NMR and TEM: from 'dimer aggregates' in acetonitrile to nano-aggregates ('metallogels') in water"
    Kotze, IA; Gerber, WJ; Wu, YS; Koch, KR (2013)
    Dalton Trans. 42(11), 3791 -- 3801.

  69. "Preparation and study of an f,f,f ',f '' covalently linked tetranuclear hetero-trimetallic complex - a europium, terbium, dysprosium triad"
    Sorensen, TJ; Tropiano, M; Blackburn, OA; Tilney, JA; Kenwright, AM; Faulkner, S (2013)
    Chem. Commun. 49(8), 783 -- 785.

  70. "Self-assembly between dicarboxylate ions and binuclear europium complexes: moving to water-pH dependence and effects of buffers"
    Hill, LR; Sorensen, TJ; Blackburn, OA; Brown, A; Beer, PD; Faulkner, S (2013)
    Dalton Trans. 42(1), 67 -- 70.

  71. "Lanthanide appended rotaxanes respond to changing chloride concentration"
    Allain, C; Beer, PD; Faulkner, S; Jones, MW; Kenwright, AM; Kilah, NL; Knighton, RC; Sorensen, TJ; Tropiano, M (2013)
    Chem. Sci. 4(1), 489 -- 493.

  72. "Structural basis behind the interaction of Zn2+ with the protein alpha-synuclein and the A beta peptide: A comparative analysis"
    Valiente-Gabioud, AA; Torres-Monserrat, V; Molina-Rubino, L; Binolfi, A; Griesinger, C; Fernandez, CO (2012)
    J. Inorg. Biochem. 117, 334 -- 341.

  73. "Origins of specificity and cross-talk in metal ion sensing by Bacillus subtilis Fur"
    Ma, Z; Faulkner, MJ; Helmann, JD (2012)
    Mol. Microbiol. 86(5), 1144 -- 1155.

  74. "Probing the Role of Met221 in the Unusual Metallo-beta-lactamase GOB-18"
    Lisa, MN; Moran-Barrio, J; Guindon, MF; Vila, AJ (2012)
    Inorg. Chem. 51(22), 12419 -- 12425.

  75. "Trimeric purine nucleoside phosphorylase: Exploring postulated one-third-of-the-sites binding in the transition state"
    Wielgus-Kutrowska, B; Breer, K; Hashimoto, M; Hikishima, S; Yokomatsu, T; Narczyk, M; Dyzma, A; Girstun, A; Staron, K; Bzowska, A (2012)
    Bioorg. Med. Chem. 20(22), 6758 -- 6769.

  76. "The Structural Domains of Pseudomonas aeruginosa Phosphorylcholine Phosphatase Cooperate in Substrate Hydrolysis: 3D Structure and Enzymatic Mechanism"
    Infantes, L; Otero, LH; Beassoni, PR; Boetsch, C; Lisa, AT; Domenech, CE; Albert, A (2012)
    J. Mol. Biol. 423(4), 503 -- 514.

  77. "Conformational dynamics of the interaction of Escherichia coli endonuclease VIII with DNA substrates"
    Kuznetsov, NA; Koval, VV; Zharkov, DO; Fedorova, OS (2012)
    DNA Repair 11(11), 884 -- 891.

  78. "Improved Inhibitor Screening Experiments by Comparative Analysis of Simulated Enzyme Progress Curves"
    Tholander, F (2012)
    PLoS One 7(10), e46764.

  79. "Stable Cu(II) and Cu(I) Mononuclear Intermediates in the Assembly of the CuA Center of Thermus thermophilus Cytochrome Oxidase"
    Chacon, KN; Blackburn, NJ (2012)
    J. Am. Chem. Soc. 134(39), 16401 -- 16412.

  80. "Kinetic mechanism of the interaction of Saccharomyces cerevisiae AP-endonuclease 1 with DNA substrates"
    Dyakonova, ES; Koval, VV; Ishchenko, AA; Saparbaev, MK; Kaptein, R; Fedorova, OS (2012)
    Biochem.-Moscow 77(10), 1162 -- 1171.

  81. "Recombinant expression of a unique chloromuconolactone dehalogenase ClcF from Rhodococcus opacus 1CP and identification of catalytically relevant residues by mutational analysis"
    Groning, JAD; Roth, C; Kaschabek, SR; Strater, N; Schlomann, M (2012)
    Arch. Biochem. Biophys. 526(1), 69 -- 77.

  82. "CYP2E1 Metabolism of Styrene Involves Allostery"
    Hartman, JH; Boysen, G; Miller, GP (2012)
    Drug Metab. Dispos. 40(10), 1976 -- 1983.

  83. "Asymmetric Ion-Pairing Catalysis of the Reversible Cyclization of 2'-Hydroxychalcone to Flavanone: Asymmetric Catalysis of an Equilibrating Reaction"
    Hintermann, L; Dittmer, C (2012)
    Eur. J. Org. Chem. (28), 5573 -- 5584.

  84. "Structural Framework for Covalent Inhibition of Clostridium botulinum Neurotoxin A by Targeting Cys(165)"
    Stura, EA; Le Roux, L; Guitot, K; Garcia, S; Bregant, S; Beau, F; Vera, L; Collet, G; Ptchelkine, D; Bakirci, H; Dive, V (2012)
    J. Biol. Chem. 287(40), 33607 -- 33614.

  85. "Synergism of the Two Myb Domains of Tay1 Protein Results in High Affinity Binding to Telomeres"
    Visacka, K; Hofr, C; Willcox, S; Necasova, I; Pavlouskova, J; Sepsiova, R; Wimmerova, M; Simonicova, L; Nosek, J; Fajkus, J; Griffith, JD; Tomaska, L (2012)
    J. Biol. Chem. 287(38), 32206 -- 32215.

  86. "An investigation of the affinities, specificity and kinetics involved in the interaction between the Yin Yang 1 transcription factor and DNA"
    Golebiowski, FM; Gorecki, A; Bonarek, P; Rapala-Kozik, M; Kozik, A; Dziedzicka-Wasylewska, M (2012)
    FEBS J. 279(17), 3147 -- 3158.

  87. "Structural Basis of Biological Nitrile Reduction"
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  702. "The dual-specific active site of 7,8-diaminopelargonic acid synthase and the effect of the R391A mutation"
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  703. "Prothrombinase assembly and S1 site occupation restore the catalytic activity of FXa impaired by mutation at the sodium-binding site"
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  704. "Incorporation of an amide into 5-phosphonoalkyl-6-D-ribitylaminopyrimidinedione lumazine synthase inhibitors results in an unexpected reversal of selectivity for riboflavin synthase vs lumazine synthase"
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  705. "The glucose-specific carrier of the Escherichia coli phosphotransferase system - Synthesis of selective inhibitors and inactivation studies"
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  706. "Mutational analysis of the base-flipping mechanism of uracil DNA glycosylase"
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    Biochemistry 41(37), 11236 -- 11247.

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  709. "Design, synthesis, and evaluation of 6-carboxyalkyl and 6-phosphonoxyalkyl derivatives of 7-oxo-8-ribitylaminolumazines as inhibitors of riboflavin synthase and lumazine synthase"
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  710. "Structural characterization of distinct alpha 3N and alpha 5 metal sites in the cyanobacterial zinc sensor SmtB"
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    Biochemistry 41(31), 9765 -- 9775.

  711. "Allosteric negative regulation of smt O/P binding of the zinc sensor, SmtB, by metal ions: A coupled equilibrium analysis"
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    Biochemistry 41(31), 9776 -- 9786.

  712. "Sugar recognition by the glucose and mannose permeases of Escherichia coli. Steady-state kinetics and inhibition studies"
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    Biochemistry 41(31), 10077 -- 10086.

  713. "C-2 epimer formation of tetrose, pentose and hexose sugars by xylose isomerase"
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  714. "Effect of sequence polymorphism and drug resistance on two HIV-1 Gag processing sites"
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  715. "Analysis of copper complex lability using Cu-64-equilibration techniques and free-ion selective radiotracer extraction"
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    Anal. Chim. Acta 464(1), 141 -- 152.

  716. "Timing of epimerization and condensation reactions in nonribosomal peptide assembly lines: Kinetic analysis of phenylalanine activating elongation modules of tyrocidine synthetase B"
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    Biochemistry 41(29), 9184 -- 9196.

  717. "Nematode anticoagulant protein c2 reveals a site on factor Xa that is important for macromolecular substrate binding to human prothrombinase."
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  718. "Chemical transformation is not rate-limiting in the reaction catalyzed by Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase"
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    Biochemistry 41(27), 8777 -- 8783.

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  722. "Inhibition of uracil DNA glycosylase by an oxacarbenium ion mimic"
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    Biochemistry 41(22), 7116 -- 7124.

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    Chem. Res. Toxicol. 15(6), 780 -- 792.

  725. "The hsp70 chaperone DnaK is a secondary amide peptide bond cis-trans isomerase"
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  726. "Synthesis and self-association of an imine-containing m-phenylene ethynylene macrocycle"
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  728. "Formation and structure of 1 : 1 complexes between aryl hydroxamic acids and vanadate at neutral pH"
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  729. "Selective inhibition of the C-domain of angiotensin I converting enzyme by bradykinin potentiating peptides"
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    Biochemistry 41(19), 6065 -- 6071.

  730. "Characterization of the protrimer intermediate in the folding pathway of the interdigitated beta-helix tailspike protein"
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    Biochemistry 41(16), 5093 -- 5103.

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    Biochemistry 41(16), 5266 -- 5275.

  732. "Mechanism of inhibition of the beta-lactamase of Enterobacter cloacae P99 by 1 : 1 complexes of vanadate with hydroxamic acid"
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    Biochemistry 41(13), 4329 -- 4338.

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  735. "The contribution of factor Xa to exosite-dependent substrate recognition by prothrombinase"
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  737. "Concerted and stepwise dehydration mechanisms observed in wild-type and mutated Escherichia coli dTDP-glucose 4,6-dehydratase"
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    Biochemistry 41(8), 2797 -- 2804.

  738. "Why OrfY? Characterization of MMOD, a long overlooked component of the soluble methane monooxygenase from Methylococcus capsulatus (Bath)"
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  740. "HIV-1 protease: Characterization of a catalytically competent enzyme-substrate intermediate"
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    Biochemistry 41(4), 1302 -- 1307.

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    Biochemistry 41(3), 1039 -- 1050.

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    Biochemistry 41(3), 1051 -- 1059.

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  744. "Urate oxidase: Single-turnover stopped-flow techniques for detecting two discrete enzyme-bound intermediates"
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  750. "The conserved methionine residue of the metzincins: A site-directed mutagenesis study"
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  751. "Protease C of Erwinia chrysanthemi: The crystal structure and role of amino acids Y228 and E189"
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    J. Am. Chem. Soc. 123(45), 11208 -- 11218.

  753. "Histidine 90 function in 4-chlorobenzoyl-coenzyme a dehalogenase catalysis"
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    Biochemistry 40(45), 13474 -- 13482.

  754. "Mechanism of inhibition of the class C beta-lactamase of Enterobacter cloacae P99 by cyclic acyl phosph(on)ates: Rescue by return"
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  757. "Effectors of HIV-1 protease peptidolytic activity"
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    Biochemistry 40(37), 11131 -- 11139.

  758. "Kinetic competence of the cADP-ribose-CD38 complex as an intermediate in the CD38/NAD(+) glycohydrolase-catalysed reactions: implication for CD38 signalling"
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    Biochem. J. 358(Pt. 2), 399 -- 406.

  759. "Characterization of the binding of deuteroporphyrin IX to the magnesium chelatase H subunit and spectroscopic properties of the complex"
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    Biochemistry 40(31), 9291 -- 9299.

  760. "Conjugation of haloalkanes by bacterial and mammalian glutathione transferases: Mono- and vicinal dihaloethanes"
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    Chem. Res. Toxicol. 14(8), 1107 -- 1117.

  761. "Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation"
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    Cell 106(2), 243 -- 252.

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  763. "Characterisation of the structure of ocr, the gene 0.3 protein of bacteriophage T7"
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    Nucleic Acids Res. 29(14), 3059 -- 3068.

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    J. Mol. Biol. 310(2), 485 -- 498.

  765. "Binding and oxidation of alkyl 4-nitrophenyl ethers by rabbit cytochrome P450 1A2: Evidence for two binding sites"
    Miller, GP; Guengerich, FP (2001)
    Biochemistry 40(24), 7262 -- 7272.

  766. "The mechanism of DNA cytosine-5 methylation - Kinetic and mutational dissection of HhaI methyltransferase"
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  767. "Reduction of aflatoxin B-1 dialdehyde by rat and human aldo-keto reductases"
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    Chem. Res. Toxicol. 14(6), 727 -- 737.

  768. "Examination of donor substrate conversion in yeast transketolase"
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  769. "Kinetic analysis of three activated phenylalanyl intermediates generated by the initiation module PheATE of gramicidin S synthetase"
    Luo, LS; Walsh, CT (2001)
    Biochemistry 40(18), 5329 -- 5337.

  770. "Characterization of glycine sarcosine N-methyltransferase and sarcosine dimethylglycine N-methyltransferase"
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  771. "Mechanism of reaction of acyl phosph(on)ates with the beta-lactamase of Enterobacter cloacae P99"
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    Biochemistry 40(15), 4610 -- 4621.

  772. "Spectroscopic properties of the metalloregulatory Cd(II) and Pb(II) sites of S. aureus pI258 CadC"
    Busenlehner, LS; Cosper, NJ; Scott, RA; Rosen, BP; Wong, MD; Giedroc, DP (2001)
    Biochemistry 40(14), 4426 -- 4436.

  773. "Oxidations of p-alkoxyacylanilides catalyzed by human cytochrome P450 1A2: Structure-activity relationships and simulation of rate constants of individual steps in catalysis"
    Yun, CH; Miller, GP; Guengerich, FP (2001)
    Biochemistry 40(14), 4521 -- 4530.

  774. "Acetohydroxyacid synthase: A proposed structure for regulatory subunits supported by evidence from mutagenesis"
    Mendel, S; Elkayam, T; Sella, C; Vinogradov, V; Vyazmensky, M; Chipman, DM; Barak, Z (2001)
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  775. "Chain length-dependent affinity of helical foldamers for a rodlike guest"
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    J. Am. Chem. Soc. 123(8), 1792 -- 1793.

  776. "Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archael plasmid copy control protein"
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    Nucleic Acids Res. 29(4), 904 -- 913.

  777. "Kinetic studies of Fos center dot Jun center dot DNA complex formation: DNA binding prior to dimerization"
    Kohler, JJ; Schepartz, A (2001)
    Biochemistry 40(1), 130 -- 142.

  778. "A kinetic study of competing fragmentation and hydrolyses of phenyl hydrogen alpha-hydroxyiminobenzylphosphonate - a case of acid mediated inhibition of acid catalysis"
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  779. "Functional roles of the conserved threonine 250 in the target recognition domain of HhaI DNA methyltransferase"
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  780. "Degradation of chlortoluron in water disinfection processes: a kinetic study"
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  781. "Characterization of enzymatic processes by rapid mix-quench mass spectrometry: The case of dTDP-glucose 4,6-dehydratase"
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    Biochemistry 39(45), 13633 -- 13640.

  782. "X-ray structures of five renin inhibitors bound to saccharopepsin: Exploration of active-site specificity"
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  783. "The N-terminal region of cystatin A (stefin A) binds to papain subsequent to the two hairpin loops of the inhibitor. Demonstration of two-step binding by rapid-kinetic studies of cystatin A labeled at the N-terminus with a fluorescent reporter group"
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  784. "The zinc metalloregulatory protein Synechococcus PCC7942 SmtB binds a single zinc ion per monomer with high affinity in a tetrahedral coordination geometry"
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    Biochemistry 39(38), 11818 -- 11829.

  785. "Mechanism of elementary catalytic steps of pyruvate oxidase from Lactobacillus plantarum"
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    Biochemistry 39(35), 10747 -- 10754.

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